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1

PREDATION BY THE TOXIC DINOFLAGELLATE DINOPHYSIS FORTII ON THE CILIATE MYRIONECTA RUBRA AND OBSERVATION OF SEQUESTRATION OF CILIATE CHLOROPLASTS

Satoshi Nagai, Goh Nitshitani, Yuji Tomaru, Sanae Sakiyama, Takashi Kamiyama

Journal:

Journal of Phycology

Year:

2008

Language:

english

File:

PDF, 1.41 MB

english, 2008

2

Respiration rates of the Japanese pearl oyster, Pinctada fucata martensii, feeding on Pavlova lutheri and Chaetoceros gracilis

Yuji Tomaru, Sachi Ebisuzaki, Zen'ichiro Kawabata, Shin-ichi Nakano

Journal:

Aquaculture Research

Year:

2002

Language:

english

File:

PDF, 87 KB

english, 2002

3

An improved method for collecting heterotrophic microorganisms living on pebbles in streams

Miwa Fukuda, Atsuko Ashida, Yuji Tomaru, Shin-ichi Nakano

Journal:

Year:

2004

Language:

english

File:

PDF, 234 KB

english, 2004

4

The dynamics of microbial and herbivorous food webs in a coastal sea with special reference to intermittent nutrient supply from bottom intrusion

Shin-ichi Nakano, Yuji Tomaru, Toshiya Katano, Atsushi Kaneda, Wataru Makino, Yuichiro Nishibe, Miho Hirose, Masashi Onji, Shin-Ichi Kitamura, Hidetaka Takeoka

Journal:

Aquatic Ecology

Year:

2005

Language:

english

File:

PDF, 179 KB

english, 2005

5

The dynamics of microbial and herbivorous food webs in a coastal sea with special reference to intermittent nutrient supply from bottom intrusion

Shin-ichi Nakano, Yuji Tomaru, Toshiya Katano, Atsushi Kaneda, Wataru Makino, Yuichiro Nishibe, Miho Hirose, Masashi Onji, Shin-Ichi Kitamura, Hidetaka Takeoka

Journal:

Aquatic Ecology

Year:

2005

Language:

english

File:

PDF, 178 KB

english, 2005

6

Flow cytometric detection and enumeration of DNA and RNA viruses infecting marine eukaryotic microalgae

Yuji Tomaru, Keizo Nagasaki

Journal:

Journal of Oceanography

Year:

2007

Language:

english

File:

PDF, 318 KB

english, 2007

7

Ecology, physiology and genetics of a phycodnavirus infecting the noxious bloom-forming raphidophyteHeterosigma akashiwo

Yuji TOMARU, Yoko SHIRAI, Keizo NAGASAKI

Journal:

Fisheries Science

Year:

2008

Language:

english

File:

PDF, 386 KB

english, 2008

8

Ecological dynamics of the bivalve-killing dinoflagellate Heterocapsa circularisquama and its infectious viruses in different locations of western Japan

Yuji Tomaru, Naotsugu Hata, Takeshi Masuda, Masaharu Tsuji, Kuniyoshi Igata, Yuji Masuda, Toshifumi Yamatogi, Masao Sakaguchi, Keizo Nagasaki

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 334 KB

english, 2007

9

Virus resistance in the toxic bloom-forming dinoflagellate Heterocapsa circularisquama to single-stranded RNA virus infection

Yuji Tomaru, Hiroyuki Mizumoto, Keizo Nagasaki

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 534 KB

english, 2009

10

Seasonal change of seston size distribution and phytoplankton composition in bivalve pearl oysterPinctada fucata martensiiculture farm

Yuji Tomaru, Namiko Udaka, Zen'ichiro Kawabata, Shin-ichi Nakano

Journal:

Year:

2002

Language:

english

File:

PDF, 427 KB

english, 2002

11

Virus isolation-based evaluation of influenza antigen rapid-detection kits with more than 3000 cases of influenza-like illness over two influenza seasons

Hidekazu Nishimura, Akira Suzuki, Oshi Watanabe, Michiko Okamoto, Akira Ohmi, Hiroko Ito, Fumiko Chiba, Yoshihiko Khono, Midori Sakurai, Tetsuzo Fukuda, Takeshi Tomaru, Yukio Nagai, Yuji Yamashita, Sh

Journal:

International Congress Series

Year:

2004

Language:

english

File:

PDF, 62 KB

english, 2004

12

Characterization of the Chaetoceros salsugineum nuclear inclusion virus coat protein gene

Yunjung Park, Sang-Eun Jung, Yuji Tomaru, Woobong Choi, Yoonhee Kim, Hiroyuki Mizumoto, Keizo Nagasaki, Tae-Jin Choi

Journal:

Year:

2009

Language:

english

File:

PDF, 652 KB

english, 2009

13

Isolation and characterization of a single-stranded RNA virus that infects the marine planktonic diatom Chaetoceros sp. (SS08-C03)

Tomaru, Yuji, Toyoda, Kensuke, Kimura, Kei, Takao, Yoshitake, Sakurada, Kiyonari, Nakayama, Natsuko, Nagasaki, Keizo

Journal:

Phycological Research

Year:

2013

Language:

english

File:

PDF, 2.62 MB

english, 2013

14

Titanium-treated surroundings attenuate psychological stress associated with autonomic nerve regulation in office workers with daily emotional stress

Aoi, Wataru, Kamata, Tohru, Ishiura, Yasuo, Tomaru, Masakazu, Satoh, Yoshihiko, Hitomi, Yuji, Uchida, Kagehiro, Naito, Yuji, Yoshikawa, Toshikazu

Journal:

Physiology & Behavior

Year:

2012

Language:

english

File:

PDF, 436 KB

english, 2012

15

First evidence for the existence of pennate diatom viruses

Tomaru, Yuji, Toyoda, Kensuke, Kimura, Kei, Hata, Naotsugu, Yoshida, Mikihide, Nagasaki, Keizo

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 400 KB

english, 2012

16

Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus

Hiroyuki Ogata, Kensuke Toyoda, Yuji Tomaru, Natsuko Nakayama…

Journal:

Virology Journal

Year:

2009

Language:

english

File:

PDF, 1.83 MB

english, 2009

17

New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis

Tomaru, Yuji, Toyoda, Kensuke, Suzuki, Hidekazu, Nagumo, Tamotsu, Kimura, Kei, Takao, Yoshitake

Journal:

Scientific Reports

Year:

2013

Language:

english

File:

PDF, 769 KB

english, 2013

18

Detection and classification of epileptic seizure using continuous wavelet transform and artificial neural network

Tomaru, Chinatsu, Iijima, Kazunori, Owada-Makabe, Kyoko, Tsubota, Yuji

Journal:

Neuroscience Research

Year:

2007

Language:

english

File:

PDF, 68 KB

english, 2007

19

Conflict in outcomes for conservation based on population genetic diversity and genetic divergence approaches: a case study in the Japanese relictual coniferSciadopitys verticillata(Sciadopityaceae)

Worth, James R. P., Yokogawa, Masashi, Pérez-Figueroa, Andrés, Tsumura, Yoshihiko, Tomaru, Nobuhiro, Janes, Jasmine K., Isagi, Yuji

Journal:

Conservation Genetics

Year:

2014

Language:

english

File:

PDF, 1.76 MB

english, 2014

20

Discovery of Two Novel Viruses Expands the Diversity of Single-Stranded DNA and Single-Stranded RNA Viruses Infecting a Cosmopolitan Marine Diatom

Kimura, Kei, Tomaru, Yuji, Wommack, K. E.

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.55 MB

english, 2015

21

[IEEE 2008 IEEE 16th International Conference on Fuzzy Systems (FUZZ-IEEE) - Hong Kong, China (2008.06.1-2008.06.6)] 2008 IEEE International Conference on Fuzzy Systems (IEEE World Congress on Computational Intelligence) - Learning by switching generation and reasoning methods — acquisition of meta-knowledge for switching with reinforcement learning

Masahiro Tomaru,, Motohide Umano,, Yuji Matsumoto,, Kazuhisa Seta,

Year:

2008

Language:

english

File:

PDF, 149 KB

english, 2008

22

Effects of Cremophor EL on the absorption of orally administered saquinavir and fexofenadine in healthy subjects

Tomaru, Atsuko, Takeda-Morishita, Mariko, Maeda, Kazuya, Banba, Hirokazu, Takayama, Kozo, Kumagai, Yuji, Kusuhara, Hiroyuki, Sugiyama, Yuichi

Journal:

Drug Metabolism and Pharmacokinetics

Year:

2015

Language:

english

File:

PDF, 578 KB

english, 2015

23

SPIE Proceedings [SPIE SPIE Astronomical Telescopes + Instrumentation - Amsterdam, Netherlands (Sunday 1 July 2012)] Millimeter, Submillimeter, and Far-Infrared Detectors and Instrumentation for Astronomy VI - The POLARBEAR-2 experiment

Tomaru, Takayuki, Holland, Wayne S., Hazumi, Masashi, Lee, Adrian T., Ade, Peter, Arnold, Kam, Barron, Darcy, Borrill, Julian, Chapman, Scott, Chinone, Yuji, Dobbs, Matt, Errard, Josquin, Fabbian, Giu

Year:

2012

Language:

english

File:

PDF, 848 KB

english, 2012

24

Phosphotriesterase activity in marine bacteria of the genera Phaeobacter, Ruegeria, and Thalassospira

Yamaguchi, Haruo, Arisaka, Hiroshi, Seki, Miki, Adachi, Masao, Kimura, Kei, Tomaru, Yuji

Journal:

International Biodeterioration & Biodegradation

Year:

2016

Language:

english

File:

PDF, 554 KB

english, 2016

25

A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography

Urayama, Syun-ichi, Yoshida-Takashima, Yukari, Yoshida, Mitsuhiro, Tomaru, Yuji, Moriyama, Hiromitsu, Takai, Ken, Nunoura, Takuro

Year:

2015

Language:

english

File:

PDF, 414 KB

english, 2015

26

Estimation of impacts of virus-containing bottom sediment on natural Heterocapsa circularisquama population

NAKAYAMA, NATSUKO, KONDO, SHIN-ICHI, HATA, NAOTSUGU, TOMARU, YUJI, TARUTANI, KENJI, NAGASAKI, KEIZO, ITAKURA, SHIGERU

Journal:

NIPPON SUISAN GAKKAISHI

Year:

2013

File:

PDF, 324 KB

2013

27

High Interaction Variability of the Bivalve-Killing Dinoflagellate Heterocapsa circularisquama Strains and Their Single-Stranded RNA Virus HcRNAV Isolates

Nakayama, Natsuko, Fujimoto, Akihiro, Kawami, Hisae, Tomaru, Yuji, Hata, Naotsugu, Nagasaki, Keizo

Journal:

Microbes and Environments

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

28

Development and Application of Quantitative Detection of Cyanophages Phylogenetically Related to Cyanophage Ma-LMM01 Infecting Microcystis aeruginosa in Fresh Water

Takashima, Yukari, Yoshida, Takashi, Yoshida, Mitsuhiro, Shirai, Yoko, Tomaru, Yuji, Takao, Yoshitake, Hiroishi, Shingo, Nagasaki, Keizo

Journal:

Microbes and Environments

Year:

2007

Language:

english

File:

PDF, 197 KB

english, 2007

29

Characterization of marine diatom-infecting virus promoters in the model diatom Phaeodactylum tricornutum

Kadono, Takashi, Miyagawa-Yamaguchi, Arisa, Kira, Nozomu, Tomaru, Yuji, Okami, Takuma, Yoshimatsu, Takamichi, Hou, Liyuan, Ohama, Takeshi, Fukunaga, Kazunari, Okauchi, Masanori, Yamaguchi, Haruo, Ohni

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

30

Bothrosome Formation in Schizochytrium aggregatum (Labyrinthulomycetes, Stramenopiles) during Zoospore Settlement

Iwata, Izumi, Kimura, Kei, Tomaru, Yuji, Motomura, Taizo, Koike, Kanae, Koike, Kazuhiko, Honda, Daiske

Journal:

Year:

2017

Language:

english

File:

PDF, 2.63 MB

english, 2017

31

Development of a method to assess the ichthyotoxicity of the harmful marine microalgae Karenia spp. using gill cell cultures from red sea bream (Pagrus major )

Ohkubo, Nobuyuki, Tomaru, Yuji, Yamaguchi, Haruo, Kitatsuji, Saho, Mochida, Kazuhiko

Journal:

Fish Physiology and Biochemistry

Year:

2017

Language:

english

File:

PDF, 1013 KB

english, 2017

32

Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan

Tomaru, Yuji, Toyoda, Kensuke, Kimura, Kei

Journal:

Year:

2017

Language:

english

File:

PDF, 971 KB

english, 2017

33

Marine Viruses that infect Eukaryotic Microalgae

KIMURA, Kei, TOMARU, Yuji

Journal:

Year:

2015

File:

PDF, 860 KB

2015

34

Rapid quantification of viable cells of the planktonic diatom Chaetoceros tenuissimus and associated RNA viruses in culture

Tomaru, Yuji, Kimura, Kei

Journal:

Plankton and Benthos Research

Year:

2016

Language:

english

File:

PDF, 769 KB

english, 2016

35

Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier

Toyoda, Kensuke, Nagasaki, Keizo, Tomaru, Yuji

Journal:

Plankton and Benthos Research

Year:

2010

Language:

english

File:

PDF, 853 KB

english, 2010

36

Isolation and Characterization of a Single-Stranded DNA Virus Infecting the Marine Diatom Chaetoceros sp. Strain SS628-11 Isolated from Western JAPAN

Kimura, Kei, Tomaru, Yuji, Martin, Darren P.

Journal:

Year:

2013

Language:

english

File:

PDF, 973 KB

english, 2013

37

Aggregate Formation During the Viral Lysis of a Marine Diatom

Yamada, Yosuke, Tomaru, Yuji, Fukuda, Hideki, Nagata, Toshi

Journal:

Frontiers in Marine Science

Year:

2018

Language:

english

File:

PDF, 960 KB

english, 2018

38

Ultrastructural observation of natural field phytoplankton cells by using rapid freezing and freeze substitution

Kimura, Kei, Tomaru, Yuji, Nagasaki, Keizo

Journal:

Plankton and Benthos Research

Year:

2012

Language:

english

File:

PDF, 4.93 MB

english, 2012

39

A unique method for culturing diatoms on agar plates

Kimura, Kei, Tomaru, Yuji

Journal:

Plankton and Benthos Research

Year:

2013

Language:

english

File:

PDF, 3.19 MB

english, 2013

40

The Vertical Distribution of Pearl Oyster Pinctada fucata martensii Spat in Uchiumi Bay

Tomaru, Yuji, Kawabata, Zen'ichiro, Nakagawa, Ken'ichi, Nakano, Shin-ichi

Journal:

Fisheries Science

Year:

1999

Language:

english

File:

PDF, 445 KB

english, 1999

41

Preliminary Analysis of Diatom-infecting Viruses in Ariake Sound, Japan

TOMARU, Yuji, MATSUBARA, Tadashi, MINE, Takayuki, SHIKATA, Tomoyuki, NAGASAKI, Keizo, KIMURA, Kei, YAMAGUCHI, Haruo

Journal:

Japan Agricultural Research Quarterly JARQ

Year:

2019

Language:

english

File:

PDF, 764 KB

english, 2019

42

The Diagnostic and Clinical Utility of the Myeloperoxidase–DNA Complex as a Biomarker in Otitis Media With Antineutrophil Cytoplasmic Antibody-associated Vasculitis

Morita, Shinya, Nakamaru, Yuji, Nakazawa, Daigo, Suzuki, Masanobu, Hoshino, Kimiko, Fukuda, Atsushi, Hattanda, Fumihiko, Kusunoki, Kanako, Tomaru, Utano, Ishizu, Akihiro, Homma, Akihiro

Journal:

Otology & Neurotology

Year:

2019

File:

PDF, 403 KB

2019

43

Magmatic fluids play a role in the development of active gas chimneys and massive gas hydrates in the Japan Sea

Snyder, Glen T., Sano, Yuji, Takahata, Naoto, Matsumoto, Ryo, Kakizaki, Yoshihiro, Tomaru, Hitoshi

Journal:

Chemical Geology

Year:

2020

Language:

english

File:

PDF, 3.73 MB

english, 2020

44

Evidence in the Japan Sea of microdolomite mineralization within gas hydrate microbiomes

Snyder, Glen T., Matsumoto, Ryo, Suzuki, Yohey, Kouduka, Mariko, Kakizaki, Yoshihiro, Zhang, Naizhong, Tomaru, Hitoshi, Sano, Yuji, Takahata, Naoto, Tanaka, Kentaro, Bowden, Stephen A., Imajo, Takumi

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 3.19 MB

english, 2020

45

The possibility of using marine diatom-infecting viral promoters for the engineering of marine diatoms

Kadono, Takashi, Tomaru, Yuji, Suzuki, Kengo, Yamada, Koji, Adachi, Masao

Journal:

Year:

2020

File:

PDF, 406 KB

2020

46

Capsid Structure of a Marine Algal Virus of the Order Picornavirales

Munke, Anna, Kimura, Kei, Tomaru, Yuji, Okamoto, Kenta, Pfeiffer, Julie K.

Journal:

Journal of Virology

Year:

2020

File:

PDF, 9.73 MB

2020

47

Fluorescence in situ hybridization using 18S rRNA-targeted probe for specific detection of thraustochytrids (Labyrinthulomycetes)

TAKAO, YOSHITAKE, TOMARU, YUJI, NAGASAKI, KEIZO, SASAKURA, YUKARI, YOKOYAMA, RINKA, HONDA, DAISKE

Journal:

Plankton and Benthos Research

Year:

2007

File:

PDF, 225 KB

2007

48

Novel marine diatom ssRNA virus NitRevRNAV infecting Nitzschia reversa

Toyoda, Kensuke, Kimura, Kei, Osada, Keigo, Williams, David M., Adachi, Tomoko, Yamada, Katsumasa, Tomaru, Yuji

Journal:

Plant Ecology and Evolution

Year:

2019

File:

PDF, 1.92 MB

2019

49

Viral RNA Genomes Identified from Marine Macroalgae and a Diatom

Chiba, Yuto, Tomaru, Yuji, Shimabukuro, Hiromori, Kimura, Kei, Hirai, Miho, Takaki, Yoshihiro, Hagiwara, Daisuke, Nunoura, Takuro, Urayama, Syun-ichi

Journal:

Microbes and Environments

Year:

2020

File:

PDF, 2.17 MB

2020

50

Novel Protocol for Estimating Viruses Specifically Infecting the Marine Planktonic Diatoms

Tomaru, Yuji, Kimura, Kei

Journal:

Year:

2020

File:

PDF, 449 KB

2020